====== Trinity ======

* Download and compile
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<code>
# wget https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.3.2.tar.gz
# tar xzf Trinity-v2.3.2.tar.gz 
# cd trinityrnaseq-Trinity-v2.3.2/
</code>
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<code>
# make
...
Performing Unit Tests of Build

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
JellyFish:               has been Installed Properly
Inchworm:                has been Installed Properly
Chrysalis:               has been Installed Properly
QuantifyGraph:           has been Installed Properly
GraphFromFasta:          has been Installed Properly
ReadsToTranscripts:      has been Installed Properly
fastool:                 has been Installed Properly
parafly:                 has been Installed Properly
samtools-0.1.19          has been Installed Properly

make plugins
...
## Checking plugin installations:

slclust:                 has been Installed Properly
collectl:                has been Installed Properly
</code>
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<code>
cd ..
mv trinityrnaseq-Trinity-v2.3.2 /usr/share/trinity 
chown -R root:root /usr/share/trinity
changemod -R 755 /usr/share/trinity
</code>
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* User script to activate Trinity
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<code bash>
export PATH=/usr/share/trinity:/usr/share/trinity/util:$PATH
export TRINITY_HOME=/usr/share/trinity
ulimit -s unlimited 
</code>
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