http://devbioinfo.to.cnr.it/ 2026-06-18T17:30:09+0200 http://devbioinfo.to.cnr.it/ http://devbioinfo.to.cnr.it/lib/tpl/drupal-garland-blue/images/favicon.ico text/html 2017-01-20T17:26:47+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=start&rev=1484929607&do=diff Bioinformatics project at CNR Piedmont Research Area. The open-source community helped us to build on our project and this site is our thanks, of course at disposal of the open-source community. Infrastructure for bioinformatics applications text/html 2017-01-20T17:26:30+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=rxr:start&rev=1484929590&do=diff Virtual server for applications - Ubuntu 16.04 - RachaelXReloaded * Install base system * Install Blast+ * R, RStudio server * Bowtie and Bowtie2 * Samtools, Tophat and Tophat2 * BWA * Bioperl * Mira * Trinity * RSEM * AllPaths-LG * More tools text/html 2017-01-20T17:25:58+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=rxr:moretools&rev=1484929558&do=diff More tools * Insync # apt-key adv --keyserver keyserver.ubuntu.com --recv-keys ACCAF35C # nano -w /etc/apt/sources.list.d/insync.list +deb http://apt.insynchq.com/ubuntu xenial non-free contrib # apt-get update # apt-get install insync-headless $ insync-headless --version 1.3.14.36131 text/html 2017-01-20T12:53:14+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=rxr:allpathlg&rev=1484913194&do=diff AllPaths-LG * Download # wget ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/LATEST_VERSION.tar.gz # tar xvf LATEST_VERSION.tar.gz * add gcc/g++ version 4.9 # apt-get install g++-4.9 # update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-4.9 10 # update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-5 20 # update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-4.9 10 # update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-5 20 text/html 2017-01-16T11:38:52+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=rxr:trinity&rev=1484563132&do=diff Trinity * Download and compile # wget https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.3.2.tar.gz # tar xzf Trinity-v2.3.2.tar.gz # cd trinityrnaseq-Trinity-v2.3.2/ # make ... Performing Unit Tests of Build ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JellyFish: has been Installed Properly Inchworm: has been Installed Properly Chrysalis: has been Installed Properly QuantifyGraph: has been Installed Properly GraphFromFa… text/html 2017-01-16T11:38:34+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?id=rxr:rsem&rev=1484563114&do=diff RSEM * Download and Install RSEM wget https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz tar -xvzf v1.3.0.tar.gz cd RSEM-1.3.0 make make install text/html 2015-01-15T13:42:16+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=logo_h51.png&ns=&rev=1421325736&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=144&h=51&t=1421325736&amp;tok=017bce&amp;media=logo_h51.png" alt="logo_h51.png" /> text/html 2015-01-15T13:39:12+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=ircres_h51.png&ns=&rev=1421325552&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=123&h=51&t=1421325552&amp;tok=dbdca5&amp;media=ircres_h51.png" alt="ircres_h51.png" /> text/html 2013-04-18T10:55:23+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-18_09_38_25.png&ns=isla&rev=1366275323&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=264&t=1366275323&amp;tok=5c0561&amp;media=isla:screenshot_from_2013-04-18_09_38_25.png" alt="isla:screenshot_from_2013-04-18_09_38_25.png" /> text/html 2013-04-18T10:53:42+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-18_09_38_02.png&ns=isla&rev=1366275222&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=344&t=1366275222&amp;tok=78f349&amp;media=isla:screenshot_from_2013-04-18_09_38_02.png" alt="isla:screenshot_from_2013-04-18_09_38_02.png" /> text/html 2013-04-18T10:50:00+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-18_09_33_54.png&ns=isla&rev=1366275000&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=239&t=1366275000&amp;tok=36881d&amp;media=isla:screenshot_from_2013-04-18_09_33_54.png" alt="isla:screenshot_from_2013-04-18_09_33_54.png" /> text/html 2013-04-18T10:47:02+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-18_09_29_31.png&ns=isla&rev=1366274822&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=75&t=1366274822&amp;tok=97ae93&amp;media=isla:screenshot_from_2013-04-18_09_29_31.png" alt="isla:screenshot_from_2013-04-18_09_29_31.png" /> text/html 2013-04-12T11:50:52+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-12_11_50_26.png&ns=isla&rev=1365760252&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=368&t=1365760252&amp;tok=204ba4&amp;media=isla:screenshot_from_2013-04-12_11_50_26.png" alt="isla:screenshot_from_2013-04-12_11_50_26.png" /> text/html 2013-04-12T11:16:43+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-12_11_16_30.png&ns=isla&rev=1365758203&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=213&t=1365758203&amp;tok=509edc&amp;media=isla:screenshot_from_2013-04-12_11_16_30.png" alt="isla:screenshot_from_2013-04-12_11_16_30.png" /> text/html 2013-04-12T11:15:03+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-12_11_14_34.png&ns=isla&rev=1365758103&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=361&t=1365758103&amp;tok=42dc99&amp;media=isla:screenshot_from_2013-04-12_11_14_34.png" alt="isla:screenshot_from_2013-04-12_11_14_34.png" /> text/html 2013-04-12T10:44:13+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-12_10_43_38.png&ns=isla&rev=1365756253&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=140&t=1365756253&amp;tok=5a70a1&amp;media=isla:screenshot_from_2013-04-12_10_43_38.png" alt="isla:screenshot_from_2013-04-12_10_43_38.png" /> text/html 2013-04-11T16:11:39+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-11_16_10_41.png&ns=isla&rev=1365689499&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=284&t=1365689499&amp;tok=8e54f7&amp;media=isla:screenshot_from_2013-04-11_16_10_41.png" alt="isla:screenshot_from_2013-04-11_16_10_41.png" /> text/html 2013-04-10T16:00:37+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-10_15_25_57.png&ns=isla&rev=1365602437&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=499&h=308&t=1365602437&amp;tok=33a905&amp;media=isla:screenshot_from_2013-04-10_15_25_57.png" alt="isla:screenshot_from_2013-04-10_15_25_57.png" /> text/html 2013-04-10T15:58:48+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-10_15_24_50.png&ns=isla&rev=1365602328&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=500&h=274&t=1365602328&amp;tok=5c910c&amp;media=isla:screenshot_from_2013-04-10_15_24_50.png" alt="isla:screenshot_from_2013-04-10_15_24_50.png" /> text/html 2013-04-10T12:45:44+0200 giancarlo (giancarlo@undisclosed.example.com) http://devbioinfo.to.cnr.it/doku.php?image=isla%3Ascreenshot_from_2013-04-10_12_40_01.png&ns=isla&rev=1365590744&tab_details=history&mediado=diff&do=media <img src="http://devbioinfo.to.cnr.it/lib/exe/fetch.php?w=461&h=500&t=1365590744&amp;tok=d8b074&amp;media=isla:screenshot_from_2013-04-10_12_40_01.png" alt="isla:screenshot_from_2013-04-10_12_40_01.png" />