Mira 3rd party tools

wget http://garr.dl.sourceforge.net/project/mira-assembler/MIRA/development/mira_3rdparty_06-07-2012.tar.bz2
tar jxvf mira_3rdparty_06-07-2012.tar.bz2 

mv 3rdparty /usr/local/bin/ 
cd /usr/local/bin/ 
chown -R root:root 3rdparty 
chmod -R 755 3rdparty 
chmod -R 644 3rdparty/README.txt 
chmod -R 644 3rdparty/midi_screen.fasta 
ln -s 3rdparty/454pairedEnd2caf.pl 454pairedEnd2caf.pl
ln -s 3rdparty/bin_fasta_on_mid_primers.pl bin_fasta_on_mid_primers.pl
ln -s 3rdparty/caf2aceMiraConsed.pl caf2aceMiraConsed.pl
ln -s 3rdparty/lucy2xml.pl lucy2xml.pl
ln -s 3rdparty/qual2ball qual2ball
ln -s 3rdparty/readpair2caf.pl readpair2caf.pl
ln -s 3rdparty/sff_extract sff_extract